Index

A

acls (plotutils.runner.EnsembleSamplerRunner attribute) (plotutils.runner.PTSamplerRunner attribute) autocorrelation_function() (in module plotutils.autocorr)

autocorrelation_length_estimate() (in module plotutils.autocorr)

B

Bounded_kde (class in plotutils.bounded_kde) bounded_log_jacobian() (in module plotutils.parameterizations) bounded_params() (in module plotutils.parameterizations)

bounded_values() (in module plotutils.parameterizations) burnedin_chain (plotutils.runner.EnsembleSamplerRunner attribute) (plotutils.runner.PTSamplerRunner attribute)

C

chain (plotutils.runner.EnsembleSamplerRunner attribute) Contour (class in plotutils.contour) contour_limits (plotutils.contour.Contour attribute) contours (plotutils.contour.Contour attribute)

cov_log_jacobian() (in module plotutils.parameterizations) cov_matrix() (in module plotutils.parameterizations) cov_parameters() (in module plotutils.parameterizations)

D

decorrelated_2d_histogram_pdf() (in module plotutils.plotutils)

E

emcee_chain_autocorrelation_lengths() (in module plotutils.autocorr) emcee_gelman_rubin_r() (in module plotutils.autocorr) emcee_ptchain_autocorrelation_lengths() (in module plotutils.autocorr) emcee_thinned_chain() (in module plotutils.autocorr)

emcee_thinned_ptchain() (in module plotutils.autocorr) EnsembleSamplerRunner (class in plotutils.runner) evaluate() (plotutils.bounded_kde.Bounded_kde method) (plotutils.log_kde.Log_kde method)

G

greedy_kde_areas_2d() (in module plotutils.plotutils)

H

high (plotutils.bounded_kde.Bounded_kde attribute)

I

in_contours() (plotutils.contour.Contour method) increasing_log_jacobian() (in module plotutils.parameterizations) increasing_params() (in module plotutils.parameterizations)

increasing_values() (in module plotutils.parameterizations) interpolated_quantile() (in module plotutils.plotutils)

K

kde (plotutils.contour.Contour attribute)

kombine_chain_autocorrelation_lengths() (in module plotutils.autocorr)

L

lnlikelihood (plotutils.runner.PTSamplerRunner attribute) lnprobability (plotutils.runner.EnsembleSamplerRunner attribute) load_header_data() (in module plotutils.plotutils) load_runner() (in module plotutils.runner)

load_state() (plotutils.runner.EnsembleSamplerRunner method) (plotutils.runner.PTSamplerRunner method) Log_kde (class in plotutils.log_kde) low (plotutils.bounded_kde.Bounded_kde attribute)

P

plot_cumulative_distribution() (in module plotutils.plotutils) plot_emcee_chain_autocorrelation_functions() (in module plotutils.autocorr) plot_emcee_chains() (in module plotutils.plotutils) plot_emcee_chains_one_fig() (in module plotutils.plotutils) plot_greedy_histogram_interval_2d() (in module plotutils.plotutils) plot_greedy_kde_interval_2d() (in module plotutils.plotutils) plot_histogram_posterior() (in module plotutils.plotutils) plot_histogram_posterior_2d() (in module plotutils.plotutils) plot_interval() (in module plotutils.plotutils) plot_kde_posterior() (in module plotutils.plotutils) plot_kde_posterior_2d() (in module plotutils.plotutils)

plot_kombine_chains() (in module plotutils.plotutils) plot_kombine_chains_one_fig() (in module plotutils.plotutils) plotutils.autocorr (module) plotutils.bounded_kde (module) plotutils.contour (module) plotutils.log_kde (module) plotutils.parameterizations (module) plotutils.plotutils (module) plotutils.runner (module) PTSamplerRunner (class in plotutils.runner)

R

reset() (plotutils.runner.EnsembleSamplerRunner method) rethin() (plotutils.runner.EnsembleSamplerRunner method) (plotutils.runner.PTSamplerRunner method)

run_mcmc() (plotutils.runner.EnsembleSamplerRunner method) run_to_neff() (plotutils.runner.EnsembleSamplerRunner method) (plotutils.runner.PTSamplerRunner method)

S

save_state() (plotutils.runner.EnsembleSamplerRunner method) (plotutils.runner.PTSamplerRunner method) stable_polynomial_log_jacobian() (in module plotutils.parameterizations)

stable_polynomial_params() (in module plotutils.parameterizations) stable_polynomial_roots() (in module plotutils.parameterizations)

T

thin_chain (plotutils.runner.EnsembleSamplerRunner attribute) (plotutils.runner.PTSamplerRunner attribute)

thin_flatchain (plotutils.runner.EnsembleSamplerRunner attribute) (plotutils.runner.PTSamplerRunner attribute)

U

usimp_lengths() (in module plotutils.parameterizations) usimp_log_jacobian() (in module plotutils.parameterizations)

usimp_parameters() (in module plotutils.parameterizations)

W

waic() (in module plotutils.autocorr)